Details for DataSet_110

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM2668084caseHomo sapiensHIC1,RASSF1,PTEN,CDKN2ARNA_seqGACTCGTCGTGGGTTCCTTT,CGAATCCATGCGCCTGAGTG,TCCCCGTAGACATTACTGTA,GTGCCTAGAAATACGTACAT,ATAGCCGCAGCAGCGCCCGC,TTGCTTCAGCAAACCGGACC,GCACCCAGGTTTCCATTGCG,GCTTTGGGCGCTAGCAAGCG,TGGCACCCGCTGGGCGCGCT,TGCAGTGCGCGCGTGAGTAG,ATTAGAACGCTCCTTGCGCG,TTGTGCGCTTGCCCGGACGC,CGTACACGCACGCACGCGAC,GACGCGGCAACGGACCGGGG,CGGGCGCCTCGGAAGACCGA,GCTGCGGCAGGATACGCGCT,AGCGCCTGTGAGCAGCCGCG,TTAAAACCGGCCCGGGTCCC,GCGGGAAAGTGGCGGTAGGC,TCAGAGCCGTTCCGAGATCT,CTGCCCCCTTAACTGCAGAC,GCACGCGCGCCGAATCCGGA,CGCCAGAGCCAGCGTTGGCA,AGGGACCGCGGTATCTTTCC,GCATGGAGCCTTCGGCTGAC,GCATGGAGCCTTCGGCTGAC,TCCCGGGCAGCGTCGTGCAC26chr9:21974786:-,chr10:87863747:+,chr17:2054810:+,chr9:21971096:+,chr9:33676983:+,chr17:2055035:+,chr9:21994659:-,chr3:50341176:-,chr3:50340941:-,chr3:50340832:+,chr3:50340749:-,chr3:50340548:-,chr9:21994552:-,chr3:50337801:+,chr9:21994407:+,chr3:50337601:-,chr9:21994287:+,chr3:50337377:-,chr9:21975132:+,chr3:50337095:+,chr17:2054413:+,chr9:21974984:+,chr10:87863492:-,chr17:2054632:+,chr9:21974786:-,chr10:87863580:+,chr17:2054694:-29133799GSE100209Primary breast myoepithelial cellcell line
GSM2668085caseHomo sapiensHIC1,RASSF1,PTEN,CDKN2ARNA_seqGACTCGTCGTGGGTTCCTTT,CGAATCCATGCGCCTGAGTG,TCCCCGTAGACATTACTGTA,GTGCCTAGAAATACGTACAT,ATAGCCGCAGCAGCGCCCGC,TTGCTTCAGCAAACCGGACC,GCACCCAGGTTTCCATTGCG,GCTTTGGGCGCTAGCAAGCG,TGGCACCCGCTGGGCGCGCT,TGCAGTGCGCGCGTGAGTAG,ATTAGAACGCTCCTTGCGCG,TTGTGCGCTTGCCCGGACGC,CGTACACGCACGCACGCGAC,GACGCGGCAACGGACCGGGG,CGGGCGCCTCGGAAGACCGA,GCTGCGGCAGGATACGCGCT,AGCGCCTGTGAGCAGCCGCG,TTAAAACCGGCCCGGGTCCC,GCGGGAAAGTGGCGGTAGGC,TCAGAGCCGTTCCGAGATCT,CTGCCCCCTTAACTGCAGAC,GCACGCGCGCCGAATCCGGA,CGCCAGAGCCAGCGTTGGCA,AGGGACCGCGGTATCTTTCC,GCATGGAGCCTTCGGCTGAC,GCATGGAGCCTTCGGCTGAC,TCCCGGGCAGCGTCGTGCAC26chr9:21974786:-,chr10:87863747:+,chr17:2054810:+,chr9:21971096:+,chr9:33676983:+,chr17:2055035:+,chr9:21994659:-,chr3:50341176:-,chr3:50340941:-,chr3:50340832:+,chr3:50340749:-,chr3:50340548:-,chr9:21994552:-,chr3:50337801:+,chr9:21994407:+,chr3:50337601:-,chr9:21994287:+,chr3:50337377:-,chr9:21975132:+,chr3:50337095:+,chr17:2054413:+,chr9:21974984:+,chr10:87863492:-,chr17:2054632:+,chr9:21974786:-,chr10:87863580:+,chr17:2054694:-29133799GSE100209Primary breast myoepithelial cellcell line
GSM2668086caseHomo sapiensHIC1,RASSF1,PTEN,CDKN2ARNA_seqGACTCGTCGTGGGTTCCTTT,CGAATCCATGCGCCTGAGTG,TCCCCGTAGACATTACTGTA,GTGCCTAGAAATACGTACAT,ATAGCCGCAGCAGCGCCCGC,TTGCTTCAGCAAACCGGACC,GCACCCAGGTTTCCATTGCG,GCTTTGGGCGCTAGCAAGCG,TGGCACCCGCTGGGCGCGCT,TGCAGTGCGCGCGTGAGTAG,ATTAGAACGCTCCTTGCGCG,TTGTGCGCTTGCCCGGACGC,CGTACACGCACGCACGCGAC,GACGCGGCAACGGACCGGGG,CGGGCGCCTCGGAAGACCGA,GCTGCGGCAGGATACGCGCT,AGCGCCTGTGAGCAGCCGCG,TTAAAACCGGCCCGGGTCCC,GCGGGAAAGTGGCGGTAGGC,TCAGAGCCGTTCCGAGATCT,CTGCCCCCTTAACTGCAGAC,GCACGCGCGCCGAATCCGGA,CGCCAGAGCCAGCGTTGGCA,AGGGACCGCGGTATCTTTCC,GCATGGAGCCTTCGGCTGAC,GCATGGAGCCTTCGGCTGAC,TCCCGGGCAGCGTCGTGCAC26chr9:21974786:-,chr10:87863747:+,chr17:2054810:+,chr9:21971096:+,chr9:33676983:+,chr17:2055035:+,chr9:21994659:-,chr3:50341176:-,chr3:50340941:-,chr3:50340832:+,chr3:50340749:-,chr3:50340548:-,chr9:21994552:-,chr3:50337801:+,chr9:21994407:+,chr3:50337601:-,chr9:21994287:+,chr3:50337377:-,chr9:21975132:+,chr3:50337095:+,chr17:2054413:+,chr9:21974984:+,chr10:87863492:-,chr17:2054632:+,chr9:21974786:-,chr10:87863580:+,chr17:2054694:-29133799GSE100209Primary breast myoepithelial cellcell line
GSM2668087controlHomo sapiensNARNA_seqNA0NA29133799GSE100209Primary breast myoepithelial cellcell line
GSM2668088controlHomo sapiensNARNA_seqNA0NA29133799GSE100209Primary breast myoepithelial cellcell line
GSM2668089controlHomo sapiensNARNA_seqNA0NA29133799GSE100209Primary breast myoepithelial cellcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes