Details for DataSet_12

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM1631498caseHomo sapiensACSL1,IL1RN,NTF3,TTNRNA_seqGCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GUGUACUCUCUGAGGUGCUC,GACGCAGAUAAGAACCAGUU,GCAUCAAGUCAGCCAUCAGC,GAGUCACCCUCCUGGAAAC,GAGCGCGGAGCCAUCUGGCC,GCGCGGCGCGGAAGGGGUUA,GCGGCGCGGCGCGGGCCGGC,GCGGUUAUAACCAGCCAACC,GCCUUGGUGAAGUCUCCUUUG,GAUGUUAAAAUCCGAAAAUGC,GGGCACAGUCCUCAGGUUUG,GAUGAGCUCUCUUCAACGUUA16chr12:102957632:+,chr2:47096265:-,chr2:113117713:+,chr2:113117780:+,chr2:113117749:+,chr12:5432049:+,chr12:5432022:+,chr12:5431991:+,chr12:5432070:-,chr1:66687075:+,chr2:178807675:+,chr12:102957632:+,chr2:178807753:-,chr12:102957632:+,chr2:178807907:-,chr12:102957632:+26030444GSE66756HEK293FTcell lineTopology construct: TOP1
GSM1631499caseHomo sapiensACSL1,IL1RN,NTF3,TTNRNA_seqGCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GCUGGGUGUCCCAUUGAAA,GUGUACUCUCUGAGGUGCUC,GACGCAGAUAAGAACCAGUU,GCAUCAAGUCAGCCAUCAGC,GAGUCACCCUCCUGGAAAC,GAGCGCGGAGCCAUCUGGCC,GCGCGGCGCGGAAGGGGUUA,GCGGCGCGGCGCGGGCCGGC,GCGGUUAUAACCAGCCAACC,GCCUUGGUGAAGUCUCCUUUG,GAUGUUAAAAUCCGAAAAUGC,GGGCACAGUCCUCAGGUUUG,GAUGAGCUCUCUUCAACGUUA16chr12:102957632:+,chr2:47096265:-,chr2:113117713:+,chr2:113117780:+,chr2:113117749:+,chr12:5432049:+,chr12:5432022:+,chr12:5431991:+,chr12:5432070:-,chr1:66687075:+,chr2:178807675:+,chr12:102957632:+,chr2:178807753:-,chr12:102957632:+,chr2:178807907:-,chr12:102957632:+26030444GSE66756HEK293FTcell lineTopology construct: TOP1
GSM1631490controlHomo sapiensNARNA_seqNA0NA26030444GSE66756HEK293FTcell line
GSM1631491controlHomo sapiensNARNA_seqNA0NA26030444GSE66756HEK293FTcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes