Details for DataSet_158
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM2425584 | case | Homo sapiens | uPA | Bisulfite_seq | GTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC | 5 | chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr1:2318504:-,chr10:73911335:+ | 29635374 | GSE92310 | HEK293T | cell line | 1/10 amount of plasmids than other groups |
| GSM2425586 | control | Homo sapiens | NA | Bisulfite_seq | NA | 0 | NA | 29635374 | GSE92310 | HEK293T | cell line | control |
JBrowse
Differentially methylated regions and off-target assessment
Differentially methylated regions
Off-target assessment
Methylation profile
