Details for DataSet_16

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM1838405caseHomo sapiensHS2RNA_seqgagacacacagaaatgtaac,ggactatgggaggtcactaa,ggtggggcactgaccccgac,gaaggttacacagaaccaga,ctagagtgatgactcctatc,gactaaaactccacctcaaa,gccctgtaagcatcctgctg,gctcatgcttggactatggg,gttctggccaggcccctgtc,aatatgtcacattctgtctc,agtgccccacccccgccttc,gtggggcactgaccccgaca,aaccttctaagcaaaccttc,gttacacagaaccagaaggc,agtcatgatgagtcatgctg,gatgagtcatgctgaggctt,actctaggctgagaacatct,gtccccagcaggatgcttac,cagggcagatggcaaaaaaa,gaggtggagttttagtcagg,aaacggcatcataaagaaaa21chr11:5280709:+,chr11:5280803:+,chr11:5280673:-,chr11:5280696:-,chr11:5280654:-,chr11:5280616:-,chr11:5280668:+,chr11:5280868:+,chr11:5280847:-,chr11:5280570:+,chr11:5280619:+,chr11:5280821:-,chr11:5280599:-,chr11:5280831:+,chr11:5280790:-,chr11:5280807:+,chr11:5280900:+,chr11:5280748:-,chr11:5280878:+,chr11:5280742:-,chr11:5280830:+26501517GSE71557K562cell line
GSM1838406caseHomo sapiensHS3RNA_seqgagacacacagaaatgtaac,ggactatgggaggtcactaa,ggtggggcactgaccccgac,gaaggttacacagaaccaga,ctagagtgatgactcctatc,gactaaaactccacctcaaa,gccctgtaagcatcctgctg,gctcatgcttggactatggg,gttctggccaggcccctgtc,aatatgtcacattctgtctc,agtgccccacccccgccttc,gtggggcactgaccccgaca,aaccttctaagcaaaccttc,gttacacagaaccagaaggc,agtcatgatgagtcatgctg,gatgagtcatgctgaggctt,actctaggctgagaacatct,gtccccagcaggatgcttac,cagggcagatggcaaaaaaa,gaggtggagttttagtcagg,aaacggcatcataaagaaaa21chr11:5280709:+,chr11:5280803:+,chr11:5280673:-,chr11:5280696:-,chr11:5280654:-,chr11:5280616:-,chr11:5280668:+,chr11:5280868:+,chr11:5280847:-,chr11:5280570:+,chr11:5280619:+,chr11:5280821:-,chr11:5280599:-,chr11:5280831:+,chr11:5280790:-,chr11:5280807:+,chr11:5280900:+,chr11:5280748:-,chr11:5280878:+,chr11:5280742:-,chr11:5280830:+26501517GSE71557K562cell line
GSM1838407caseHomo sapiensHS4RNA_seqgagacacacagaaatgtaac,ggactatgggaggtcactaa,ggtggggcactgaccccgac,gaaggttacacagaaccaga,ctagagtgatgactcctatc,gactaaaactccacctcaaa,gccctgtaagcatcctgctg,gctcatgcttggactatggg,gttctggccaggcccctgtc,aatatgtcacattctgtctc,agtgccccacccccgccttc,gtggggcactgaccccgaca,aaccttctaagcaaaccttc,gttacacagaaccagaaggc,agtcatgatgagtcatgctg,gatgagtcatgctgaggctt,actctaggctgagaacatct,gtccccagcaggatgcttac,cagggcagatggcaaaaaaa,gaggtggagttttagtcagg,aaacggcatcataaagaaaa21chr11:5280709:+,chr11:5280803:+,chr11:5280673:-,chr11:5280696:-,chr11:5280654:-,chr11:5280616:-,chr11:5280668:+,chr11:5280868:+,chr11:5280847:-,chr11:5280570:+,chr11:5280619:+,chr11:5280821:-,chr11:5280599:-,chr11:5280831:+,chr11:5280790:-,chr11:5280807:+,chr11:5280900:+,chr11:5280748:-,chr11:5280878:+,chr11:5280742:-,chr11:5280830:+26501517GSE71557K562cell line
GSM1838420controlHomo sapiensNARNA_seqNA0NA26501517GSE71557K562cell line
GSM1838421controlHomo sapiensNARNA_seqNA0NA26501517GSE71557K562cell line
GSM1838422controlHomo sapiensNARNA_seqNA0NA26501517GSE71557K562cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes