Details for DataSet_160

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_accession Cell_type Sample_Type Notes
GSM2425585caseHomo sapiensTGFBR3Bisulfite_seqGCGAGGGAGGGCGAGTGCGC,GAGTGAAGGAGGGCAGTCGG,GAGTCCCCAGCGGGTCCGGA3chr1:91886172:-,chr1:91886086:-,chr1:91886006:-29635374GSE92310HEK293Tcell line1/10 amount of plasmids than other groups
GSM2905809caseHomo sapiensuPABisulfite_seqGTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC5chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+29635374GSE92310HEK293Tcell line
GSM2905810caseHomo sapiensuPABisulfite_seqGTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC5chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+29635374GSE92310HEK293Tcell line
GSM2905811caseHomo sapiensuPABisulfite_seqGTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC5chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+29635374GSE92310HEK293Tcell line
GSM2905812controlHomo sapiensNABisulfite_seqNA0NA29635374GSE92310HEK293Tcell line
GSM2905813controlHomo sapiensNABisulfite_seqNA0NA29635374GSE92310HEK293Tcell line
GSM2905814controlHomo sapiensNABisulfite_seqNA0NA29635374GSE92310HEK293Tcell line

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Differentially methylated regions and off-target assessment

  Differentially methylated regions

  Off-target assessment

  Methylation profile

GSM2425585
GSM2905809
GSM2905810
GSM2905811
GSM2905812
GSM2905813
GSM2905814