Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GSM2425585 | case | Homo sapiens | TGFBR3 | Bisulfite_seq | GCGAGGGAGGGCGAGTGCGC,GAGTGAAGGAGGGCAGTCGG,GAGTCCCCAGCGGGTCCGGA | 3 | chr1:91886172:-,chr1:91886086:-,chr1:91886006:- | 29635374 | GSE92310 | HEK293T | cell line | 1/10 amount of plasmids than other groups |
GSM2905809 | case | Homo sapiens | uPA | Bisulfite_seq | GTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC | 5 | chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+ | 29635374 | GSE92310 | HEK293T | cell line | |
GSM2905810 | case | Homo sapiens | uPA | Bisulfite_seq | GTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC | 5 | chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+ | 29635374 | GSE92310 | HEK293T | cell line | |
GSM2905811 | case | Homo sapiens | uPA | Bisulfite_seq | GTGAGCGTTGCGGAAGCACG,GAGCCGGGCGGGAGAGGGAG,GAGTCAAGGCGCCCCGTCCC,GCCCGGGGATCTCAGGACCG,GGGACAGGTGGACCCTGGCC | 5 | chr10:73911229:-,chr10:73911162:-,chr10:73911003:+,chr10:73911061:+,chr10:73911335:+ | 29635374 | GSE92310 | HEK293T | cell line | |
GSM2905812 | control | Homo sapiens | NA | Bisulfite_seq | NA | 0 | NA | 29635374 | GSE92310 | HEK293T | cell line | |
GSM2905813 | control | Homo sapiens | NA | Bisulfite_seq | NA | 0 | NA | 29635374 | GSE92310 | HEK293T | cell line | |
GSM2905814 | control | Homo sapiens | NA | Bisulfite_seq | NA | 0 | NA | 29635374 | GSE92310 | HEK293T | cell line |
Differentially methylated regions
Off-target assessment
Methylation profile