Details for DataSet_192
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM2872432 | case | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line | |
| GSM2872433 | case | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line | |
| GSM2872434 | case | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line | |
| GSM2872447 | control | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line | |
| GSM2872448 | control | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line | |
| GSM2872449 | control | Homo sapiens | CDCC85C,MIR152,SHB,UNC5C | Bisulfite_seq | CTGTGTGCTAAACCTCCCGTTGG,ATACACTCCGACTCGGGCTCTGG,TACAAAGGATGGAACGCGGCAGG,GTCCAGACTTCGGCGTGCGGCGG | 4 | chr4:95549187:-,chr9:38017561:-,chr17:48037200:-,chr14:99563282:- | 29907613 | GSE107607 | HeLa | cell line |
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Differentially methylated regions and off-target assessment
Differentially methylated regions
Off-target assessment
Methylation profile
