Details for DataSet_196

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
ERS2006738caseHomo sapiensEEA-motifRNA_seqCCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC5chr4:143109175:-,chr3:23766227:+,chr9:6721541:-,chr17:51642903:-,chr7:139101222:+29980666E-MTAB-6186CCD-1112Skcell linep53 shRNA(+); 12 days after reprogramming; transfected with 36bp guide RNA
ERS2006739caseHomo sapiensEEA-motifRNA_seqCCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC5chr4:143109175:-,chr3:23766227:+,chr9:6721541:-,chr17:51642903:-,chr7:139101222:+29980666E-MTAB-6186CCD-1112Skcell linep53 shRNA(+); 12 days after reprogramming; transfected with 36bp guide RNA
ERS2006740caseHomo sapiensEEA-motifRNA_seqCCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC5chr4:143109175:-,chr3:23766227:+,chr9:6721541:-,chr17:51642903:-,chr7:139101222:+29980666E-MTAB-6186CCD-1112Skcell linep53 shRNA(+); 12 days after reprogramming; transfected with 36bp guide RNA
ERS2006741caseHomo sapiensEEA-motifRNA_seqCCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC5chr4:143109175:-,chr3:23766227:+,chr9:6721541:-,chr17:51642903:-,chr7:139101222:+29980666E-MTAB-6186CCD-1112Skcell linep53 shRNA(+); 12 days after reprogramming; transfected with 36bp guide RNA
ERS2006750controlHomo sapiensNARNA_seqNA0NA29980666E-MTAB-6186CCD-1112Skcell line
ERS2006751controlHomo sapiensNARNA_seqNA0NA29980666E-MTAB-6186CCD-1112Skcell line
ERS2006752controlHomo sapiensNARNA_seqNA0NA29980666E-MTAB-6186CCD-1112Skcell line
ERS2006753controlHomo sapiensNARNA_seqNA0NA29980666E-MTAB-6186CCD-1112Skcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes