Details for DataSet_197
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_source | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ERS2006742 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr9:106680574:-,chrX:149971335:+,chrX:16742545:-,chr19:18298585:-,chr5:81588815:- | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 4 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006743 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr9:106680574:-,chrX:149971335:+,chrX:16742545:-,chr19:18298585:-,chr5:81588815:- | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 4 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006744 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr9:106680574:-,chrX:149971335:+,chrX:16742545:-,chr19:18298585:-,chr5:81588815:- | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 4 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006745 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr9:106680574:-,chrX:149971335:+,chrX:16742545:-,chr19:18298585:-,chr5:81588815:- | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 4 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006750 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006751 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006752 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006753 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line |
Gene expression profile
Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
