Details for DataSet_198
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_source | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ERS2006746 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr16:9682155:-,chr7:101190366:-,chr16:84409957:+,chr2:119173879:+,chr10:130189396:+ | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 8 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006747 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr16:9682155:-,chr7:101190366:-,chr16:84409957:+,chr2:119173879:+,chr10:130189396:+ | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 8 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006748 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr16:9682155:-,chr7:101190366:-,chr16:84409957:+,chr2:119173879:+,chr10:130189396:+ | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 8 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006749 | case | Homo sapiens | EEA-motif | RNA_seq | CCCAGCACTTTGGG,AATCCCAGCACTTT,GCCTCCCAAAGTGC,GCTACTTGGGAGGC,GCCTCCCAAGTAGC | 5 | chr16:9682155:-,chr7:101190366:-,chr16:84409957:+,chr2:119173879:+,chr10:130189396:+ | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | p53 shRNA(+); 8 days after reprogramming; transfected with 36bp guide RNA |
| ERS2006750 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006751 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006752 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line | |
| ERS2006753 | control | Homo sapiens | NA | RNA_seq | NA | 0 | NA | 29980666 | E-MTAB-6186 | CCD-1112Sk | cell line |
Gene expression profile
Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
