Details for DataSet_2


Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM1145140caseHomo sapiensHBG1RNA_seqGCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT4chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-23892895GSE47114HEK293Tcell line
GSM1145141caseHomo sapiensHBG1RNA_seqGCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT4chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-23892895GSE47114HEK293Tcell line
GSM1145142caseHomo sapiensHBG1RNA_seqGCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT4chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-23892895GSE47114HEK293Tcell line
GSM1145136controlHomo sapiensNARNA_seqNA0NA23892895GSE47114HEK293Tcell line
GSM1145137controlHomo sapiensNARNA_seqNA0NA23892895GSE47114HEK293Tcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes