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Details for
DataSet_2
Sample info of the DataSet
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Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
GSM1145140
case
Homo sapiens
HBG1
RNA_seq
GCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT
4
chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-
23892895
GSE47114
HEK293T
cell line
GSM1145141
case
Homo sapiens
HBG1
RNA_seq
GCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT
4
chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-
23892895
GSE47114
HEK293T
cell line
GSM1145142
case
Homo sapiens
HBG1
RNA_seq
GCTAGGGATGAAGAATAAA,TTGACCAATAGCCTTGACA,TGCAAATATCTGTCTGAAA,AAATTAGCAGTATCCTCTT
4
chr11:5250066:-,chr11:5249883:-,chr11:5254882:-,chr11:5250020:-
23892895
GSE47114
HEK293T
cell line
GSM1145136
control
Homo sapiens
NA
RNA_seq
NA
0
NA
23892895
GSE47114
HEK293T
cell line
GSM1145137
control
Homo sapiens
NA
RNA_seq
NA
0
NA
23892895
GSE47114
HEK293T
cell line
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Gene expression profile
Padj
less than 0.01
less than 0.05
less than 0.1
less than 0.2
less than 0.5
less than 1
abs(LogFC)
greater than 0.585
greater than 1
greater than 1.5
greater than 2
Top DEG
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Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes