Details for DataSet_227
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMN10025436 | case | Mus musculus | Sox1 | Bisulfite_seq | GTTAATCATTCGGAGCGCGC,GCGCGGGCGGCGGAGCAAGG | 2 | chr8:12445288:+,chr8:12445475:- | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1+ |
| SAMN10025437 | case | Mus musculus | Sox1 | Bisulfite_seq | GTTAATCATTCGGAGCGCGC,GCGCGGGCGGCGGAGCAAGG | 2 | chr8:12445288:+,chr8:12445475:- | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1+ |
| SAMN10025438 | case | Mus musculus | Sox1 | Bisulfite_seq | GTTAATCATTCGGAGCGCGC,GCGCGGGCGGCGGAGCAAGG | 2 | chr8:12445288:+,chr8:12445475:- | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1+ |
| SAMN10025439 | case | Mus musculus | Sox1 | Bisulfite_seq | GTTAATCATTCGGAGCGCGC,GCGCGGGCGGCGGAGCAAGG | 2 | chr8:12445288:+,chr8:12445475:- | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1+ |
| SAMN10025422 | control | Mus musculus | NA | Bisulfite_seq | NA | 0 | NA | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1- |
| SAMN10025424 | control | Mus musculus | NA | Bisulfite_seq | NA | 0 | NA | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1- |
| SAMN10025425 | control | Mus musculus | NA | Bisulfite_seq | NA | 0 | NA | 31073172 | PRJNA490128 | ES-derived neural progenitor cells | tissue | Sox1- |
JBrowse
Differentially methylated regions and off-target assessment
Differentially methylated regions
Off-target assessment
Methylation profile
