Details for DataSet_235
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM3452777 | case | Homo sapiens | PDGFRA | ChIP_seq_CTCF | CACAGATAATGCAGCTAGA | 1 | chr4:53930168:+ | 31534142 | GSE121998 | HEK293 | cell line | |
| GSM3452778 | case | Homo sapiens | PDGFRA | ChIP_seq_CTCF | CACAGATAATGCAGCTAGA | 1 | chr4:53930168:+ | 31534142 | GSE121998 | HEK293 | cell line | |
| GSM3452779 | case | Homo sapiens | PDGFRA | ChIP_seq_CTCF | CACAGATAATGCAGCTAGA | 1 | chr4:53930168:+ | 31534142 | GSE121998 | HEK293 | cell line | |
| GSM3452774 | control | Homo sapiens | NA | ChIP_seq_CTCF | NA | 1 | NA | 31534142 | GSE121998 | HEK293 | cell line | |
| GSM3452775 | control | Homo sapiens | NA | ChIP_seq_CTCF | NA | 1 | NA | 31534142 | GSE121998 | HEK293 | cell line | |
| GSM3452776 | control | Homo sapiens | NA | ChIP_seq_CTCF | NA | 1 | NA | 31534142 | GSE121998 | HEK293 | cell line |
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
Signal density at the binding sites
