Details for DataSet_286
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|
Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM4190316 | case | Homo sapiens | HS2 | ChIP_seq_H3K27me3 | GGCCCTGTAAGCATCCTGCTG | 1 | chr11:5280667:+ | 31980609 | GSE132216 | K562 | cell line | |
| GSM4190317 | case | Homo sapiens | HS2 | ChIP_seq_H3K27me3 | GGCCCTGTAAGCATCCTGCTG | 1 | chr11:5280667:+ | 31980609 | GSE132216 | K562 | cell line | |
| GSM4190324 | control | Homo sapiens | Gal4 | ChIP_seq_H3K27me3 | GAACGACTAGTTAGGCGTGTA | 1 | NA | 31980609 | GSE132216 | K562 | cell line | |
| GSM4190325 | control | Homo sapiens | Gal4 | ChIP_seq_H3K27me3 | GAACGACTAGTTAGGCGTGTA | 1 | NA | 31980609 | GSE132216 | K562 | cell line |
Showing 1 to 4 of 4 entries
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
| Genomic region | Position strand | sgRNA sequence | MIT Specificity Score | CFD Specificity Score | targetGenomeGeneLocus | Overlop |
|---|---|---|---|---|---|---|
| chr1:143234500-143235500:+ | 468forw | AATCCTCTAATGGAAAGGAATGG | 45 | 99 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 389forw | CGAATGGAATCAACCTCACACGG | 28 | 97 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 382rev | ATTCCGTTTGATTCCGTGTGAGG | 46 | 96 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 399forw | CAACCTCACACGGAATCAAACGG | 16 | 94 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 933forw | CGAATGGAATCATCAACAGATGG | 5 | 91 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 656forw | CAGATGGAATCATCATAAAATGG | 4 | 90 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 451rev | ATTCCATTCCTTTCCATTAGAGG | 10 | 88 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 458forw | ACTCGAATGGAATCCTCTAATGG | 6 | 88 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 97forw | TGTCATCAAATGGACTTCAAAGG | 4 | 85 | intergenic:RP11-344P13.1-5S_rRNA | No |
| chr1:143234500-143235500:+ | 775rev | TTTCATTCGTTTCAATTCGATGG | 2 | 81 | intergenic:RP11-344P13.1-5S_rRNA | No |
Showing 1 to 10 of 76 entries
Signal density at the binding sites
