CRISPRepi

Details for DataSet_291

Sample info of the DataSet

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Sample_accession	Sample_group	Organism	Target_gene	Data_type	sgRNA	sgRNA_Number_perVector	sgRNA_coordinate	PubMed	Data_source	Cell_type	Sample_Type	Notes
GSM3324047	case	Homo sapiens	CD34	RNA_seq	GAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC	6	chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-	33560917	GSE118277	HEK293T	cell line
GSM3324048	case	Homo sapiens	CD34	RNA_seq	GAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC	6	chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-	33560917	GSE118277	HEK293T	cell line
GSM3324049	case	Homo sapiens	CD34	RNA_seq	GAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC	6	chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-	33560917	GSE118277	HEK293T	cell line
GSM3324050	case	Homo sapiens	CD34	RNA_seq	GAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC	6	chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-	33560917	GSE118277	HEK293T	cell line
GSM3324051	control	Homo sapiens	NA	RNA_seq	NA	0	NA	33560917	GSE118277	HEK293T	cell line
GSM3324052	control	Homo sapiens	NA	RNA_seq	NA	0	NA	33560917	GSE118277	HEK293T	cell line
GSM3324053	control	Homo sapiens	NA	RNA_seq	NA	0	NA	33560917	GSE118277	HEK293T	cell line
GSM3324054	control	Homo sapiens	NA	RNA_seq	NA	0	NA	33560917	GSE118277	HEK293T	cell line

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Gene expression profile

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image

Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes

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