Details for DataSet_291

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM3324047caseHomo sapiensCD34RNA_seqGAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC6chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-33560917GSE118277HEK293Tcell line
GSM3324048caseHomo sapiensCD34RNA_seqGAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC6chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-33560917GSE118277HEK293Tcell line
GSM3324049caseHomo sapiensCD34RNA_seqGAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC6chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-33560917GSE118277HEK293Tcell line
GSM3324050caseHomo sapiensCD34RNA_seqGAAAGCTGAACGAGGCATC,CTCTCCAGAAAGCTGAACG,CCGGCAAGGCTGCCACAAA,CCTTTTGCAAGATTGTTAC,CACTAAATGTGCCACATTG,TGTGTGTGAGTGAAGCGTC6chr1:207911538:-,chr1:207911621:-,chr1:207911662:+,chr1:207911360:-,chr1:207911367:-,chr1:207911434:-33560917GSE118277HEK293Tcell line
GSM3324051controlHomo sapiensNARNA_seqNA0NA33560917GSE118277HEK293Tcell line
GSM3324052controlHomo sapiensNARNA_seqNA0NA33560917GSE118277HEK293Tcell line
GSM3324053controlHomo sapiensNARNA_seqNA0NA33560917GSE118277HEK293Tcell line
GSM3324054controlHomo sapiensNARNA_seqNA0NA33560917GSE118277HEK293Tcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes