Details for DataSet_295
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM4932370 | case | Homo sapiens | OCT4 | ChIP_seq_H3S28ph | ACTCCACTGCACTCCAGTCT,TCTGTGGGGGACCTGCACTG,GGGGCGCCAGTTGTGTCTCC,ACACCATTGCCACCACCATT | 4 | chr6:31170797:-,chr8:34591627:-,chr6:31170866:-,chr6:31170836:- | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932371 | case | Homo sapiens | OCT4 | ChIP_seq_H3S28ph | ACTCCACTGCACTCCAGTCT,TCTGTGGGGGACCTGCACTG,GGGGCGCCAGTTGTGTCTCC,ACACCATTGCCACCACCATT | 4 | chr6:31170797:-,chr8:34591627:-,chr6:31170866:-,chr6:31170836:- | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932372 | case | Homo sapiens | OCT4 | ChIP_seq_H3S28ph | ACTCCACTGCACTCCAGTCT,TCTGTGGGGGACCTGCACTG,GGGGCGCCAGTTGTGTCTCC,ACACCATTGCCACCACCATT | 4 | chr6:31170797:-,chr8:34591627:-,chr6:31170866:-,chr6:31170836:- | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932373 | case | Homo sapiens | OCT4 | ChIP_seq_H3S28ph | ACTCCACTGCACTCCAGTCT,TCTGTGGGGGACCTGCACTG,GGGGCGCCAGTTGTGTCTCC,ACACCATTGCCACCACCATT | 4 | chr6:31170797:-,chr8:34591627:-,chr6:31170866:-,chr6:31170836:- | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932374 | control | Homo sapiens | NA | ChIP_seq_H3S28ph | NA | 1 | NA | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932375 | control | Homo sapiens | NA | ChIP_seq_H3S28ph | NA | 1 | NA | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932376 | control | Homo sapiens | NA | ChIP_seq_H3S28ph | NA | 1 | NA | 33563994 | GSE156381 | HEK293T | cell line | |
| GSM4932377 | control | Homo sapiens | NA | ChIP_seq_H3S28ph | NA | 1 | NA | 33563994 | GSE156381 | HEK293T | cell line |
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
Signal density at the binding sites
