Details for DataSet_31

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM2241602caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr12:40896617:-,chrX:144200807:+,chr17:45766556:+,chr16:49675525:+,chr1:154980964:-,chr1:53105446:-,chr1:53105493:+,chr3:146523305:-27595405GSE84534Muscletissue
GSM2241603caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr12:40896617:-,chrX:144200807:+,chr17:45766556:+,chr16:49675525:+,chr1:154980964:-,chr1:53105446:-,chr1:53105493:+,chr3:146523305:-27595405GSE84534Muscletissue
GSM2241604caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr12:40896617:-,chrX:144200807:+,chr17:45766556:+,chr16:49675525:+,chr1:154980964:-,chr1:53105446:-,chr1:53105493:+,chr3:146523305:-27595405GSE84534Muscletissue
GSM2241596controlMus musculusNARNA_seqNA0NA27595405GSE84534Muscletissue
GSM2241597controlMus musculusNARNA_seqNA0NA27595405GSE84534Muscletissue
GSM2241598controlMus musculusNARNA_seqNA0NA27595405GSE84534Muscletissue

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes