Details for DataSet_33

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM2241611caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr10:14446538:+,chrX:144200807:+,chrX:88323110:+,chr16:49675525:+,chr18:86326192:+,chr1:53105446:-,chr1:53105493:+,chr12:117783522:-27595405GSE84534Lymph nodestissue
GSM2241612caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr10:14446538:+,chrX:144200807:+,chrX:88323110:+,chr16:49675525:+,chr18:86326192:+,chr1:53105446:-,chr1:53105493:+,chr12:117783522:-27595405GSE84534Lymph nodestissue
GSM2241613caseMus musculusMstn,Fst,Pd-l1,cd47RNA_seqGTCAAGCCCAAAGTCTCTCCGGGACCTCTT,GGAATCCCGGTGCTGCCGCTACCCCCTCA,GGTTCTTATTTGCGT,GGAAATCAAAGCGGC,GCTCGAGATAAGACC,GCTAAAGTCATCCGC,GAAGGAGTTCCTCGG,GAGGAGGTCCACTTC8chr10:14446538:+,chrX:144200807:+,chrX:88323110:+,chr16:49675525:+,chr18:86326192:+,chr1:53105446:-,chr1:53105493:+,chr12:117783522:-27595405GSE84534Lymph nodestissue
GSM2241605controlMus musculusNARNA_seqNA0NA27595405GSE84534Lymph nodestissue
GSM2241606controlMus musculusNARNA_seqNA0NA27595405GSE84534Lymph nodestissue
GSM2241607controlMus musculusNARNA_seqNA0NA27595405GSE84534Lymph nodestissue

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes