Details for DataSet_363
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM2664030 | case | Homo sapiens | CISH;FHL2;G0S2;MMP17 | ChIP_seq_H3K27ac | CTGGAGGAAGCGTGCCATC,TCACCTAGCGGATGGGTAG,CCGCCGCCAGTAACAGGGA,GAGGAACTGTAAATACCCC,GCTCAGAAGTGGCGGGTGG,CTGGTTGCTCAACGTGATC,AGAAGCGTTGAAGGCAGTG,GCCGCTTCCAAGAACTCAG,TCTCCCCGAAAGTGGTCAT,AAGGGCAGAGTGACCTGCA,GTTTGCTTGGCTAGGAGAG,GAAACATGACTCCAGAATA,GAGCTCATCCTAATCCCCC,TAGGGTAACGAACATAGGG,GTTCCTCCCACTCAAACCT,CATAAATGCTGGCGGGAAG,CTGCCTGTGTGAATCAGAC,CTCTCCTGGCGGAGATGCT,ATTCCAGCGTACTTGGCAC,GAGATTACTGTGCACACTC,GATAACAGCGATAACCTCA,GTTTCTGCAACCGGGTTTC,TACGGTCTGCTGCTGCATC,GTCAACAGGTCAAATTGGC,ATGATAGCCCCTATTAAAT,CTTGATTTGTACCACGGGC,GATCAAGGTGTGCTGCCAT,TGACCAGTTAAGGCTCTCT,ACAAGTTTGAGTCAGCACA,GCTTGACCAAAAGTTATGA,AACAAGGCAGCGGAGCGGT,GGATGCATGAGCCCGGCTC,GAGATCCCCAGGGCGTCCT,CAGATCAGAGACACTCGCT,GCCCTAATGCAAGCTGAGA,TAGCTGAACGATCCAGACA,GGTCGCTCCACCAGCTTCA,TGTTTCCTGGTGCGTGGCT,GGGTCCGGCCACCTGGAGT,CAGGGAGTGTCCTTCCTGT,GGTCCTTACACCAGAAATG,TGACAATGGAACTTGACCT | 42 | chr3:50538529:-,chr3:50538611:-,chr3:50538502:+,chr2:105404081:-,chr2:105404154:-,chr2:105404235:+,chr2:105404347:+,chr1:209670702:+,chr2:105409779:+,chr12:131860651:+,chr2:105409872:-,chr12:131860823:+,chr2:105409928:-,chr12:131860901:-,chr12:131861120:-,chr12:131804092:+,chr12:131804068:-,chr12:131804117:+,chr12:131804013:+,chr12:131800196:+,chr3:50605278:+,chr3:50605137:-,chr3:50605325:+,chr3:50605241:+,chr3:50601154:-,chr3:50601209:-,chr3:50601234:+,chr3:50601300:-,chr3:50538578:+,chr2:105410016:+,chr2:105522722:+,chr2:105522885:-,chr2:105522953:-,chr2:105522987:+,chr1:209670372:-,chr1:209670760:+,chr12:131800298:-,chr1:209671200:+,chr12:131800227:+,chr1:209670958:-,chr12:131800344:-,chr1:209670560:- | 28964699 | GSE99905 | Ishikawa endometrial cancer | cell line | w/o ER |
| GSM2664031 | control | Homo sapiens | IL1RN | ChIP_seq_H3K27ac | TGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC | 4 | chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+ | 28964699 | GSE99905 | Ishikawa endometrial cancer | cell line | w/o ER |
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
Signal density at the binding sites
