Details for DataSet_366

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM3028661caseHomo sapiensLTR5HSRNA_seqTACTAAGGGAACTCAG,AAAACCGCCTTAGGGC,AAAACTGCCTTAGGGC,AGCCCGACACCCGTAA,AGGAGAAAACCACCTT,TACCATCTCGGAGAGG,AACCTTGGACAATACC,TAAAGGGTCTGTGCTG,GACATTCCATTGCCCA,ATAGAGAAAGAAAAGT,GAAACGCCCACAGGTG,AAGCTTTCTTGCTTAG12chrX:23660411:-,chr1:66591977:-,chr5:106259362:+,chr13:18251284:-,chr1:46320710:+,chr10:133541497:+,chr1:144555641:+,chr1:146949262:+,chr8:17907854:+,chr8:112772973:+,chr4:10127738:-,chr21:14281326:-30070637GSE111337NCCITcell line
GSM3028667caseHomo sapiensLTR5HSRNA_seqTACTAAGGGAACTCAG,AAAACCGCCTTAGGGC,AAAACTGCCTTAGGGC,AGCCCGACACCCGTAA,AGGAGAAAACCACCTT,TACCATCTCGGAGAGG,AACCTTGGACAATACC,TAAAGGGTCTGTGCTG,GACATTCCATTGCCCA,ATAGAGAAAGAAAAGT,GAAACGCCCACAGGTG,AAGCTTTCTTGCTTAG12chrX:23660411:-,chr1:66591977:-,chr5:106259362:+,chr13:18251284:-,chr1:46320710:+,chr10:133541497:+,chr1:144555641:+,chr1:146949262:+,chr8:17907854:+,chr8:112772973:+,chr4:10127738:-,chr21:14281326:-30070637GSE111337NCCITcell line
GSM3028663controlHomo sapiensNARNA_seqCGGAGTAACAAGCGGACGGA,CGAGTGTTATACGCACCGTT,CAACGGGTTCTCCCGGCTAC,CAGGAGTCGCCGATACGCGT,TTCACGTCGTCTCGCGACCA,GTGTCGGATTCCGCCGCTTA,CACGAACTCACACCGCGCGA,CGCTAGTACGCTCCTCTATA,TCGCGCTTGGGTTATACGCT,CTATCTCGAGTGGTAATGCG,AATCGACTCGAACTTCGTGT,CCCGATGGACTATACCGAAC12NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA30070637GSE111337NCCITcell line
GSM3028669controlHomo sapiensNARNA_seqCGGAGTAACAAGCGGACGGA,CGAGTGTTATACGCACCGTT,CAACGGGTTCTCCCGGCTAC,CAGGAGTCGCCGATACGCGT,TTCACGTCGTCTCGCGACCA,GTGTCGGATTCCGCCGCTTA,CACGAACTCACACCGCGCGA,CGCTAGTACGCTCCTCTATA,TCGCGCTTGGGTTATACGCT,CTATCTCGAGTGGTAATGCG,AATCGACTCGAACTTCGTGT,CCCGATGGACTATACCGAAC12NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA30070637GSE111337NCCITcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes