Details for DataSet_367

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM3028662caseHomo sapiensLTR5HSRNA_seqTACTAAGGGAACTCAG,AAAACCGCCTTAGGGC,AAAACTGCCTTAGGGC,AGCCCGACACCCGTAA,AGGAGAAAACCACCTT,TACCATCTCGGAGAGG,AACCTTGGACAATACC,TAAAGGGTCTGTGCTG,GACATTCCATTGCCCA,ATAGAGAAAGAAAAGT,GAAACGCCCACAGGTG,AAGCTTTCTTGCTTAG12chr7:4591477:-,chr9:79312519:+,chr19:52944775:+,chr13:49599351:-,chr8:145028389:-,chrX:57335596:+,chr19:23078660:-,chr1:147106140:-,chr8:17916383:+,chr14:62488694:-,chr14:77661778:-,chr1:70460812:-30070637GSE111337NCCITcell line
GSM3028668caseHomo sapiensLTR5HSRNA_seqTACTAAGGGAACTCAG,AAAACCGCCTTAGGGC,AAAACTGCCTTAGGGC,AGCCCGACACCCGTAA,AGGAGAAAACCACCTT,TACCATCTCGGAGAGG,AACCTTGGACAATACC,TAAAGGGTCTGTGCTG,GACATTCCATTGCCCA,ATAGAGAAAGAAAAGT,GAAACGCCCACAGGTG,AAGCTTTCTTGCTTAG12chr7:4591477:-,chr9:79312519:+,chr19:52944775:+,chr13:49599351:-,chr8:145028389:-,chrX:57335596:+,chr19:23078660:-,chr1:147106140:-,chr8:17916383:+,chr14:62488694:-,chr14:77661778:-,chr1:70460812:-30070637GSE111337NCCITcell line
GSM3028663controlHomo sapiensNARNA_seqCGGAGTAACAAGCGGACGGA,CGAGTGTTATACGCACCGTT,CAACGGGTTCTCCCGGCTAC,CAGGAGTCGCCGATACGCGT,TTCACGTCGTCTCGCGACCA,GTGTCGGATTCCGCCGCTTA,CACGAACTCACACCGCGCGA,CGCTAGTACGCTCCTCTATA,TCGCGCTTGGGTTATACGCT,CTATCTCGAGTGGTAATGCG,AATCGACTCGAACTTCGTGT,CCCGATGGACTATACCGAAC12NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA30070637GSE111337NCCITcell line
GSM3028669controlHomo sapiensNARNA_seqCGGAGTAACAAGCGGACGGA,CGAGTGTTATACGCACCGTT,CAACGGGTTCTCCCGGCTAC,CAGGAGTCGCCGATACGCGT,TTCACGTCGTCTCGCGACCA,GTGTCGGATTCCGCCGCTTA,CACGAACTCACACCGCGCGA,CGCTAGTACGCTCCTCTATA,TCGCGCTTGGGTTATACGCT,CTATCTCGAGTGGTAATGCG,AATCGACTCGAACTTCGTGT,CCCGATGGACTATACCGAAC12NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA30070637GSE111337NCCITcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes