Details for DataSet_370
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM3215614 | case | Homo sapiens | SPI1 | ATAC_seq | GTATCGAAGGGCCTGCCGCT,GCGGGGCACCCCATCCTGAG,GCCAGGGCTCCTGTAGCTCA | 3 | chr11:47378546:+,chr11:47378412:-,chr11:47378480:- | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215615 | case | Homo sapiens | SPI1 | ATAC_seq | GTATCGAAGGGCCTGCCGCT,GCGGGGCACCCCATCCTGAG,GCCAGGGCTCCTGTAGCTCA | 3 | chr11:47378546:+,chr11:47378412:-,chr11:47378480:- | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215616 | case | Homo sapiens | SPI1 | ATAC_seq | GTATCGAAGGGCCTGCCGCT,GCGGGGCACCCCATCCTGAG,GCCAGGGCTCCTGTAGCTCA | 3 | chr11:47378546:+,chr11:47378412:-,chr11:47378480:- | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215609 | control | Homo sapiens | NA | ATAC_seq | GCGCGTATCGTTTCATCGGCG,GATCGTCGGTCGGGTCATACG,GTTCGTCGCGATAGATGATCG | 3 | NA,NA,NA | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215610 | control | Homo sapiens | NA | ATAC_seq | GCGCGTATCGTTTCATCGGCG,GATCGTCGGTCGGGTCATACG,GTTCGTCGCGATAGATGATCG | 3 | NA,NA,NA | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215611 | control | Homo sapiens | NA | ATAC_seq | GCGCGTATCGTTTCATCGGCG,GATCGTCGGTCGGGTCATACG,GTTCGTCGCGATAGATGATCG | 3 | NA,NA,NA | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215612 | control | Homo sapiens | NA | ATAC_seq | GTCGTTTCCGCTTAACGGCG,GCGGAGGCTAAGCGTCGCAA,GGCTTCCGCGGCCCGTTCAA | 3 | NA,NA,NA | 30580963 | GSE116247 | GM12878 | cell line |
| GSM3215613 | control | Homo sapiens | NA | ATAC_seq | GTCGTTTCCGCTTAACGGCG,GCGGAGGCTAAGCGTCGCAA,GGCTTCCGCGGCCCGTTCAA | 3 | NA,NA,NA | 30580963 | GSE116247 | GM12878 | cell line |
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
Signal density at the binding sites
