Details for DataSet_373
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_source | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM3408738 | case | Homo sapiens | TREX8168 | RNA_seq | CGGGAGTTGAGGGTGCCGAG,AGGGCCGGGATGCTGGTGCC,AGTCAGGTCCACGGGAGAGC,AAGACCATGCTGAAGGATAA,GCCTTTGGTTTCCATGCAGC | 5 | chr9:128393917:+,chr9:128393807:-,chr9:128393605:-,chr9:128393688:-,chr9:128393708:- | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408739 | case | Homo sapiens | TREX8168 | RNA_seq | CGGGAGTTGAGGGTGCCGAG,AGGGCCGGGATGCTGGTGCC,AGTCAGGTCCACGGGAGAGC,AAGACCATGCTGAAGGATAA,GCCTTTGGTTTCCATGCAGC | 5 | chr9:128393917:+,chr9:128393807:-,chr9:128393605:-,chr9:128393688:-,chr9:128393708:- | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408740 | case | Homo sapiens | TREX8168 | RNA_seq | CGGGAGTTGAGGGTGCCGAG,AGGGCCGGGATGCTGGTGCC,AGTCAGGTCCACGGGAGAGC,AAGACCATGCTGAAGGATAA,GCCTTTGGTTTCCATGCAGC | 5 | chr9:128393917:+,chr9:128393807:-,chr9:128393605:-,chr9:128393688:-,chr9:128393708:- | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408735 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408736 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408737 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line |
Gene expression profile
Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
