Details for DataSet_374
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_source | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM3408741 | case | Homo sapiens | TREX0108 | RNA_seq | AATCTTGATTCCTCTCCTAT,CTGCAAACATATAAGTTAGA,TTTGTGTGCACTACAGAGGA,ACAGACACCAATGCTTTAAA,TACTTAATCCTTCGTGACTA | 5 | chr1:83694106:+,chr1:83694146:+,chr1:83694304:+,chr1:83694254:+,chr1:83694174:+ | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408742 | case | Homo sapiens | TREX0108 | RNA_seq | AATCTTGATTCCTCTCCTAT,CTGCAAACATATAAGTTAGA,TTTGTGTGCACTACAGAGGA,ACAGACACCAATGCTTTAAA,TACTTAATCCTTCGTGACTA | 5 | chr1:83694106:+,chr1:83694146:+,chr1:83694304:+,chr1:83694254:+,chr1:83694174:+ | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408743 | case | Homo sapiens | TREX0108 | RNA_seq | AATCTTGATTCCTCTCCTAT,CTGCAAACATATAAGTTAGA,TTTGTGTGCACTACAGAGGA,ACAGACACCAATGCTTTAAA,TACTTAATCCTTCGTGACTA | 5 | chr1:83694106:+,chr1:83694146:+,chr1:83694304:+,chr1:83694254:+,chr1:83694174:+ | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408735 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408736 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line | |
| GSM3408737 | control | Homo sapiens | NA | RNA_seq | AAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT | 4 | NA,NA,NA,NA | 30639214 | GSE120702 | HEK293FT | cell line |
Gene expression profile
Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
