Details for DataSet_375

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM3408744caseHomo sapiensTREX5008RNA_seqGTGGCTACATTTCTTTGCAC,GTTAAATATCCCTGTGCTTG,TAACAACTAAAAGAGCTGGT,CATTGCAATGACAAGTGAAT,CATGTCTACTACAAATCTTA5chr3:147939769:-,chr3:147939729:+,chr3:147939893:+,chr3:147939874:+,chr3:147939858:-30639214GSE120702HEK293FTcell line
GSM3408745caseHomo sapiensTREX5008RNA_seqGTGGCTACATTTCTTTGCAC,GTTAAATATCCCTGTGCTTG,TAACAACTAAAAGAGCTGGT,CATTGCAATGACAAGTGAAT,CATGTCTACTACAAATCTTA5chr3:147939769:-,chr3:147939729:+,chr3:147939893:+,chr3:147939874:+,chr3:147939858:-30639214GSE120702HEK293FTcell line
GSM3408746caseHomo sapiensTREX5008RNA_seqGTGGCTACATTTCTTTGCAC,GTTAAATATCCCTGTGCTTG,TAACAACTAAAAGAGCTGGT,CATTGCAATGACAAGTGAAT,CATGTCTACTACAAATCTTA5chr3:147939769:-,chr3:147939729:+,chr3:147939893:+,chr3:147939874:+,chr3:147939858:-30639214GSE120702HEK293FTcell line
GSM3408735controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line
GSM3408736controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line
GSM3408737controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes