Details for DataSet_376

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM3408747caseHomo sapiensTREX4039RNA_seqCTTACCCTGAACAATTAGAG,GAGATCCTCTCTAATTGTTC,AATTGATCACTGCTAACTCC,CTCTCTAATTGTTCAGGGTA,GAATGCACTTATCATCAGCA5chr2:56050067:+,chr2:56049898:-,chr2:56050069:-,chr2:56050061:+,chr2:56050098:+30639214GSE120702HEK293FTcell line
GSM3408748caseHomo sapiensTREX4039RNA_seqCTTACCCTGAACAATTAGAG,GAGATCCTCTCTAATTGTTC,AATTGATCACTGCTAACTCC,CTCTCTAATTGTTCAGGGTA,GAATGCACTTATCATCAGCA5chr2:56050067:+,chr2:56049898:-,chr2:56050069:-,chr2:56050061:+,chr2:56050098:+30639214GSE120702HEK293FTcell line
GSM3408749caseHomo sapiensTREX4039RNA_seqCTTACCCTGAACAATTAGAG,GAGATCCTCTCTAATTGTTC,AATTGATCACTGCTAACTCC,CTCTCTAATTGTTCAGGGTA,GAATGCACTTATCATCAGCA5chr2:56050067:+,chr2:56049898:-,chr2:56050069:-,chr2:56050061:+,chr2:56050098:+30639214GSE120702HEK293FTcell line
GSM3408735controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line
GSM3408736controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line
GSM3408737controlHomo sapiensNARNA_seqAAGATGAAAGGAAAGGCGTT,GTCCATACGCATAATCACCG,ACTTACCTCCGGACCCCCAT,CCTACACGACGAACGCAGGT4NA,NA,NA,NA30639214GSE120702HEK293FTcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes