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Details for
DataSet_377
Sample info of the DataSet
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Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
GSM3486970
case
Mus musculus
RLTR13D6
RNA_seq
TAGAGACAGTGAAACTAATT,TATTGTTAAACCCACCACCA,GTGAAGAAACCTGTCTCAGG,GGAATGTATACATCAAAAGA
4
chr3:88189249:-,chr8:56145407:+,chrX:127949367:-,chr9:76309275:+
31012843
GSE122856
mESCs
cell line
GSM3486971
case
Mus musculus
RLTR13D6
RNA_seq
TAGAGACAGTGAAACTAATT,TATTGTTAAACCCACCACCA,GTGAAGAAACCTGTCTCAGG,GGAATGTATACATCAAAAGA
4
chr3:88189249:-,chr8:56145407:+,chrX:127949367:-,chr9:76309275:+
31012843
GSE122856
mESCs
cell line
GSM3486972
case
Mus musculus
RLTR13D6
RNA_seq
TAGAGACAGTGAAACTAATT,TATTGTTAAACCCACCACCA,GTGAAGAAACCTGTCTCAGG,GGAATGTATACATCAAAAGA
4
chr3:88189249:-,chr8:56145407:+,chrX:127949367:-,chr9:76309275:+
31012843
GSE122856
mESCs
cell line
GSM3486967
control
Mus musculus
NA
RNA_seq
NA
0
NA
31012843
GSE122856
mESCs
cell line
GSM3486968
control
Mus musculus
NA
RNA_seq
NA
0
NA
31012843
GSE122856
mESCs
cell line
GSM3486969
control
Mus musculus
NA
RNA_seq
NA
0
NA
31012843
GSE122856
mESCs
cell line
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Gene expression profile
Padj
less than 0.01
less than 0.05
less than 0.1
less than 0.2
less than 0.5
less than 1
abs(LogFC)
greater than 0.585
greater than 1
greater than 1.5
greater than 2
Top DEG
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Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes