Details for DataSet_388

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_accession Cell_type Sample_Type Notes
GSM3521327caseHomo sapiensLTR5HSChIP_seq_Cas9TACTAAGGGAACTCAG,AAAACCGCCTTAGGGC,AAAACTGCCTTAGGGC,AGCCCGACACCCGTAA,AGGAGAAAACCACCTT,TACCATCTCGGAGAGG,AACCTTGGACAATACC,TAAAGGGTCTGTGCTG,GACATTCCATTGCCCA,ATAGAGAAAGAAAAGT,GAAACGCCCACAGGTG,AAGCTTTCTTGCTTAG12chr11:10391856:-,chr4:22598180:-,chr6:165501038:-,chr7:101150477:+,chr7:141751552:+,chr7:47990180:-,chrX:135031207:-,chrX:113991041:+,chr8:17907854:+,chr14:62488694:-,chr15:65226924:-,chr22:24630830:-30070637GSE111337NCCITcell line
GSM3521317controlHomo sapiensNAChIP_seq_Cas9CGGAGTAACAAGCGGACGGA,CGAGTGTTATACGCACCGTT,CAACGGGTTCTCCCGGCTAC,CAGGAGTCGCCGATACGCGT,TTCACGTCGTCTCGCGACCA,GTGTCGGATTCCGCCGCTTA,CACGAACTCACACCGCGCGA,CGCTAGTACGCTCCTCTATA,TCGCGCTTGGGTTATACGCT,CTATCTCGAGTGGTAATGCG,AATCGACTCGAACTTCGTGT,CCCGATGGACTATACCGAAC12NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA30070637GSE111337NCCITcell line

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Differential binding sites and off-target assessment

  Differential binding sites

  Off-target assessment

  Signal density at the binding sites

GSM3521327
GSM3521317