Details for DataSet_4

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
SAMN03248350caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248351caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248352caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248353caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248354caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248355caseHomo sapiensHBG1,HBG2RNA_seqTCCCTGAACTTTTCAAAAAT,CACTGGAGCTAGAGACAAGA,GTATCCTCTATGATGGGAGA,AAAAACTGGAATGACTGAAT,AAAATTAGCAGTATCCTCTT,ATGCAAATATCTGTCTGAAA,CTTGACCAATAGCCTTGACA,GGCTAGGGATGAAGAATAAA8chr11:5250110:-,chr11:5250066:-,chr11:5250020:-,chr11:5254882:-,chr11:5249883:-,chr5:108651014:-,chr11:5250214:-,chr11:5250163:-25494202PRJNA269048HEK293FTcell line
SAMN03248356controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line
SAMN03248357controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line
SAMN03248358controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line
SAMN03248359controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line
SAMN03248360controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line
SAMN03248361controlHomo sapiensNARNA_seqCTGAAAAAGGAAGGAGTTGA1chr3:182882197:-25494202PRJNA269048HEK293FTcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes