Details for DataSet_470

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM5959109caseMus musculusRho;Opn1mwRNA_seqGTACGGTGACGTAGAGCGTG,GGGGCCTTTAAGGTA,GCCACCCCTGTGGAT,CTTGCTTGTTTACAA4chr1:24542673:+,chr6:115909136:-,chrX:73171000:+,chr13:9456054:+37852949GSE198893retinatissue
GSM5959110caseMus musculusRho;Opn1mwRNA_seqGTACGGTGACGTAGAGCGTG,GGGGCCTTTAAGGTA,GCCACCCCTGTGGAT,CTTGCTTGTTTACAA4chr1:24542673:+,chr6:115909136:-,chrX:73171000:+,chr13:9456054:+37852949GSE198893retinatissue
GSM5959111caseMus musculusRho;Opn1mwRNA_seqGTACGGTGACGTAGAGCGTG,GGGGCCTTTAAGGTA,GCCACCCCTGTGGAT,CTTGCTTGTTTACAA4chr1:24542673:+,chr6:115909136:-,chrX:73171000:+,chr13:9456054:+37852949GSE198893retinatissue
GSM5959112controlMus musculusLacZRNA_seqNA1NA37852949GSE198893retinatissue
GSM5959113controlMus musculusLacZRNA_seqNA1NA37852949GSE198893retinatissue
GSM5959114controlMus musculusLacZRNA_seqNA1NA37852949GSE198893retinatissue
GSM5959115controlMus musculusLacZRNA_seqNA1NA37852949GSE198893retinatissue

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes