Details for DataSet_537

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114279caseHomo sapienschr17-45907842RNA_seqtactggaactGAGTGCTAGG,caacttaacgcactccccat,AAAactcatttggaccaatg,ctcgttaatcctcagtcccg,ctcgggactgaggattaacg,gaggataataatccccacct,TACATATGACCCATTCACAG7chr17:45907815:+,chr17:45907817:-,chr17:45907835:-,chr17:45908070:-,chr17:45907623:-,chr17:45907720:+,chr17:45907737:-38232730GSE228121XCL4cell line
GSM7114309caseHomo sapienschr17-45907842RNA_seqtactggaactGAGTGCTAGG,caacttaacgcactccccat,AAAactcatttggaccaatg,ctcgttaatcctcagtcccg,ctcgggactgaggattaacg,gaggataataatccccacct,TACATATGACCCATTCACAG7chr17:45907815:+,chr17:45907817:-,chr17:45907835:-,chr17:45908070:-,chr17:45907623:-,chr17:45907720:+,chr17:45907737:-38232730GSE228121XCL4cell line
GSM7114314caseHomo sapienschr17-45907842RNA_seqtactggaactGAGTGCTAGG,caacttaacgcactccccat,AAAactcatttggaccaatg,ctcgttaatcctcagtcccg,ctcgggactgaggattaacg,gaggataataatccccacct,TACATATGACCCATTCACAG7chr17:45907815:+,chr17:45907817:-,chr17:45907835:-,chr17:45908070:-,chr17:45907623:-,chr17:45907720:+,chr17:45907737:-38232730GSE228121XCL4cell line
GSM7114480caseHomo sapienschr17-45907842RNA_seqtactggaactGAGTGCTAGG,caacttaacgcactccccat,AAAactcatttggaccaatg,ctcgttaatcctcagtcccg,ctcgggactgaggattaacg,gaggataataatccccacct,TACATATGACCCATTCACAG7chr17:45907815:+,chr17:45907817:-,chr17:45907835:-,chr17:45908070:-,chr17:45907623:-,chr17:45907720:+,chr17:45907737:-38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes