Details for DataSet_553

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114317caseHomo sapienschr17-46267785RNA_seqTCACAGGACAGACATTCTCG,GGTCCTACGGACATCCCAGA,ACTCACCAGAGTCCAGTGCT,ACGAAAGCCTTCTGTGAGTG,GAACGGGATAGTGCATGACG5chr17:45840617:+,chr17:46267327:+,chr17:46266378:+,chr17:45784490:-,chr17:46264711:-38232730GSE228121XCL4cell line
GSM7114507caseHomo sapienschr17-46267785RNA_seqTCACAGGACAGACATTCTCG,GGTCCTACGGACATCCCAGA,ACTCACCAGAGTCCAGTGCT,ACGAAAGCCTTCTGTGAGTG,GAACGGGATAGTGCATGACG5chr17:45840617:+,chr17:46267327:+,chr17:46266378:+,chr17:45784490:-,chr17:46264711:-38232730GSE228121XCL4cell line
GSM7114530caseHomo sapienschr17-46267785RNA_seqTCACAGGACAGACATTCTCG,GGTCCTACGGACATCCCAGA,ACTCACCAGAGTCCAGTGCT,ACGAAAGCCTTCTGTGAGTG,GAACGGGATAGTGCATGACG5chr17:45840617:+,chr17:46267327:+,chr17:46266378:+,chr17:45784490:-,chr17:46264711:-38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes