Details for DataSet_558

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114332caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114361caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114395caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114409caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114437caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114626caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114634caseHomo sapienschr17-45326805RNA_seqGATGCCGGAAATGTCAGTCA,GACTTCTTGTGATTAGCACA,ATTAGGTAGAGGGAAAACCC,ggaggcatgtggttcccgag4chr17:45326865:+,chr17:45326626:+,chr17:45326663:-,chr17:45326733:+38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes