Details for DataSet_560

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114334caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114390caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114391caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114432caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114433caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114622caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114623caseHomo sapienschr17-44987687RNA_seqGGGGGATGTTAGGCTCCTAG,AATTCAAATGAGGCTCTCGG,TTCAGTCGGCTTCTCCAATG,TTCAGCTCCCCCATCTACGG4chr17:44987840:-,chr17:44987466:+,chr17:44987717:-,chr17:44987746:+38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes