Details for DataSet_570

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114356caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114369caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114400caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114442caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114609caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114630caseHomo sapienschr17-45942497RNA_seqTTGACAGTACCCACGACACG,GACCAGGGGATGATCTCACA,CTAGATTCAGAGTCCACCAG,GCTCCCGTCTGAATTTGGAG4chr17:45942582:-,chr17:45942466:-,chr17:45942388:+,chr17:45942544:-38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes