Details for DataSet_578

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114375caseHomo sapienschr17-45941019RNA_seqgagctcattacctcttaagg,TGGCTCAACCCTCATCACTG,AGGAAAAAGCAATTGACTCG,TGGAAAACAGGAGACCGGAG4chr17:45941078:+,chr17:45940800:-,chr17:45940964:-,chr17:45941031:-38232730GSE228121XCL4cell line
GSM7114415caseHomo sapienschr17-45941019RNA_seqgagctcattacctcttaagg,TGGCTCAACCCTCATCACTG,AGGAAAAAGCAATTGACTCG,TGGAAAACAGGAGACCGGAG4chr17:45941078:+,chr17:45940800:-,chr17:45940964:-,chr17:45941031:-38232730GSE228121XCL4cell line
GSM7114417caseHomo sapienschr17-45941019RNA_seqgagctcattacctcttaagg,TGGCTCAACCCTCATCACTG,AGGAAAAAGCAATTGACTCG,TGGAAAACAGGAGACCGGAG4chr17:45941078:+,chr17:45940800:-,chr17:45940964:-,chr17:45941031:-38232730GSE228121XCL4cell line
GSM7114612caseHomo sapienschr17-45941019RNA_seqgagctcattacctcttaagg,TGGCTCAACCCTCATCACTG,AGGAAAAAGCAATTGACTCG,TGGAAAACAGGAGACCGGAG4chr17:45941078:+,chr17:45940800:-,chr17:45940964:-,chr17:45941031:-38232730GSE228121XCL4cell line
GSM7114636caseHomo sapienschr17-45941019RNA_seqgagctcattacctcttaagg,TGGCTCAACCCTCATCACTG,AGGAAAAAGCAATTGACTCG,TGGAAAACAGGAGACCGGAG4chr17:45941078:+,chr17:45940800:-,chr17:45940964:-,chr17:45941031:-38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes