Details for DataSet_580


Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM7114379caseHomo sapienschr17-45894300RNA_seqTCTCCTACAGAAGTCCTGAG,GTAAAGGGCAGCGGACCCAG,GCGCGCCCACTAGTGGCCGG,GGGAACGCGAGCCTCCCCAG4chr17:45894470:-,chr17:45894107:-,chr17:45894152:+,chr17:45894408:+38232730GSE228121XCL4cell line
GSM7114422caseHomo sapienschr17-45894300RNA_seqTCTCCTACAGAAGTCCTGAG,GTAAAGGGCAGCGGACCCAG,GCGCGCCCACTAGTGGCCGG,GGGAACGCGAGCCTCCCCAG4chr17:45894470:-,chr17:45894107:-,chr17:45894152:+,chr17:45894408:+38232730GSE228121XCL4cell line
GSM7114423caseHomo sapienschr17-45894300RNA_seqTCTCCTACAGAAGTCCTGAG,GTAAAGGGCAGCGGACCCAG,GCGCGCCCACTAGTGGCCGG,GGGAACGCGAGCCTCCCCAG4chr17:45894470:-,chr17:45894107:-,chr17:45894152:+,chr17:45894408:+38232730GSE228121XCL4cell line
GSM7114614caseHomo sapienschr17-45894300RNA_seqTCTCCTACAGAAGTCCTGAG,GTAAAGGGCAGCGGACCCAG,GCGCGCCCACTAGTGGCCGG,GGGAACGCGAGCCTCCCCAG4chr17:45894470:-,chr17:45894107:-,chr17:45894152:+,chr17:45894408:+38232730GSE228121XCL4cell line
GSM7114639caseHomo sapienschr17-45894300RNA_seqTCTCCTACAGAAGTCCTGAG,GTAAAGGGCAGCGGACCCAG,GCGCGCCCACTAGTGGCCGG,GGGAACGCGAGCCTCCCCAG4chr17:45894470:-,chr17:45894107:-,chr17:45894152:+,chr17:45894408:+38232730GSE228121XCL4cell line
GSM7114331controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line
GSM7114360controlHomo sapiensGFPRNA_seqNA1NA38232730GSE228121XCL4cell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes