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Details for
DataSet_664
Sample info of the DataSet
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Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
GSM7749260
case
Mus musculus
MT2_Mm
RNA_seq
CACCAGTGACCCTTATCTGG,GAGGCTTGGAGATCCTTATC,AAGGAACACACCTTTAATCT,TGGAGACAATATAAGGACAT,CAGCTGTGAATGGAAGTCCA,ATTTATTGATGACTTACAGT
6
chr15:22395191:+,chr7:119029593:+,chr8:52469043:-,chr4:101701411:-,chrX:120042485:-,chr13:97852946:+
38381606
GSE242121
E2C embryos
embryos
GSM7749261
case
Mus musculus
MT2_Mm
RNA_seq
CACCAGTGACCCTTATCTGG,GAGGCTTGGAGATCCTTATC,AAGGAACACACCTTTAATCT,TGGAGACAATATAAGGACAT,CAGCTGTGAATGGAAGTCCA,ATTTATTGATGACTTACAGT
6
chr15:22395191:+,chr7:119029593:+,chr8:52469043:-,chr4:101701411:-,chrX:120042485:-,chr13:97852946:+
38381606
GSE242121
E2C embryos
embryos
GSM7749258
control
Mus musculus
NT
RNA_seq
GCTTAGTTACGCGTGGACGA
1
NA
38381606
GSE242121
E2C embryos
embryos
GSM7749259
control
Mus musculus
NT
RNA_seq
GCTTAGTTACGCGTGGACGA
1
NA
38381606
GSE242121
E2C embryos
embryos
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Gene expression profile
Padj
less than 0.01
less than 0.05
less than 0.1
less than 0.2
less than 0.5
less than 1
abs(LogFC)
greater than 0.585
greater than 1
greater than 1.5
greater than 2
Top DEG
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Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes