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Details for
DataSet_667
Sample info of the DataSet
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Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
GSM7790745
case
Homo sapiens
LTR12C
RNA_seq
GAACCTTTGTGTCTAGCTCA
1
chr10:5032154:-
38874474
GSE243546
HCT116
cell line
GSM7790746
case
Homo sapiens
LTR12C
RNA_seq
GAACCTTTGTGTCTAGCTCA
1
chr10:5032154:-
38874474
GSE243546
HCT116
cell line
GSM7790747
case
Homo sapiens
LTR12C
RNA_seq
GAACCTTTGTGTCTAGCTCA
1
chr10:5032154:-
38874474
GSE243546
HCT116
cell line
GSM7790742
control
Homo sapiens
NA
RNA_seq
CCATTATTGCATTAATCTGA
1
chr18:71650482:-
38874474
GSE243546
HCT116
cell line
GSM7790743
control
Homo sapiens
NA
RNA_seq
CCATTATTGCATTAATCTGA
1
chr18:71650482:-
38874474
GSE243546
HCT116
cell line
GSM7790744
control
Homo sapiens
NA
RNA_seq
CCATTATTGCATTAATCTGA
1
chr18:71650482:-
38874474
GSE243546
HCT116
cell line
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Gene expression profile
Padj
less than 0.01
less than 0.05
less than 0.1
less than 0.2
less than 0.5
less than 1
abs(LogFC)
greater than 0.585
greater than 1
greater than 1.5
greater than 2
Top DEG
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Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes