Details for DataSet_675
Sample info of the DataSet
| Sample_accession | Sample_group | Organism | Target_gene | Data_type | sgRNA | sgRNA_Number_perVector | sgRNA_coordinate | PubMed | Data_accession | Cell_type | Sample_Type | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM7892630 | case | Homo sapiens | MYB | ChIP_seq_H3K27ac | TGCCTGCTCATAGGAAGGGT,ATTGGATAGGTAGGTAGCCC,GACTTACATAGTCTGAATGG,GCACTTCACCGTAGTTACAA,TGCTGTTGGCATCAGGGAAC,TGTAATGATTAATACCAACA,AAGATCTCCTGCTACTTGTG,GTAGAGCAACGCCTAGACAA,AATGCTTAGAACCTACAGAG,AGCCGCCTTGGTGAAGCCAA,GTGCCCCGAAACTTAGCCCT,CTTGACTTGAAACACTGCTC | 12 | chr6:135244178:+,chr6:135244347:+,chr6:135244378:+,chr6:135267061:+,chr6:135267113:-,chr6:135267466:-,chr6:135271121:+,chr6:135271140:-,chr6:135271283:+,chr6:135231650:-,chr6:135231853:-,chr6:135231680:- | 38720882 | GSE247537 | SNU719 | cell line | |
| GSM7892631 | case | Homo sapiens | MYB | ChIP_seq_H3K27ac | TGCCTGCTCATAGGAAGGGT,ATTGGATAGGTAGGTAGCCC,GACTTACATAGTCTGAATGG,GCACTTCACCGTAGTTACAA,TGCTGTTGGCATCAGGGAAC,TGTAATGATTAATACCAACA,AAGATCTCCTGCTACTTGTG,GTAGAGCAACGCCTAGACAA,AATGCTTAGAACCTACAGAG,AGCCGCCTTGGTGAAGCCAA,GTGCCCCGAAACTTAGCCCT,CTTGACTTGAAACACTGCTC | 12 | chr6:135244178:+,chr6:135244347:+,chr6:135244378:+,chr6:135267061:+,chr6:135267113:-,chr6:135267466:-,chr6:135271121:+,chr6:135271140:-,chr6:135271283:+,chr6:135231650:-,chr6:135231853:-,chr6:135231680:- | 38720882 | GSE247537 | SNU719 | cell line | |
| GSM7892626 | control | Homo sapiens | NA | ChIP_seq_H3K27ac | AGAGTCAGGACTCGTCCAGT,AAATAGAGAGTGCACCCATA,CATGACACCAAGGTCCTGTG | 3 | chr6:135255784:-,chr6:135257791:+,chr6:135256095:- | 38720882 | GSE247537 | SNU719 | cell line | |
| GSM7892627 | control | Homo sapiens | NA | ChIP_seq_H3K27ac | AGAGTCAGGACTCGTCCAGT,AAATAGAGAGTGCACCCATA,CATGACACCAAGGTCCTGTG | 3 | chr6:135255784:-,chr6:135257791:+,chr6:135256095:- | 38720882 | GSE247537 | SNU719 | cell line |
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Differential binding sites and off-target assessment
Differential binding sites
Off-target assessment
Signal density at the binding sites
