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Details for
DataSet_697
Sample info of the DataSet
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Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
Sample_accession
Sample_group
Organism
Target_gene
Data_type
sgRNA
sgRNA_Number_perVector
sgRNA_coordinate
PubMed
Data_source
Cell_type
Sample_Type
Notes
SAMEA110644460
case
Mus musculus
Hbby
RNA_seq
AGGACCGAATGGGGTCGAGG,CAAGTAGAGAAGGACCGAAT,CCTCAGCTCTGCCATACCCA
3
chr7:103499518:-,chr7:103499528:-,chr7:103499174:-
38724747
E-MTAB-12101
mESCs
cell line
SAMEA110644461
case
Mus musculus
Hbby
RNA_seq
AGGACCGAATGGGGTCGAGG,CAAGTAGAGAAGGACCGAAT,CCTCAGCTCTGCCATACCCA
3
chr7:103499518:-,chr7:103499528:-,chr7:103499174:-
38724747
E-MTAB-12101
mESCs
cell line
SAMEA110644462
control
Mus musculus
Hbby
RNA_seq
AGGACCGAATGGGGTCGAGG,CAAGTAGAGAAGGACCGAAT,CCTCAGCTCTGCCATACCCA
3
chr7:103499518:-,chr7:103499528:-,chr7:103499174:-
38724747
E-MTAB-12101
mESCs
cell line
SAMEA110644463
control
Mus musculus
Hbby
RNA_seq
AGGACCGAATGGGGTCGAGG,CAAGTAGAGAAGGACCGAAT,CCTCAGCTCTGCCATACCCA
3
chr7:103499518:-,chr7:103499528:-,chr7:103499174:-
38724747
E-MTAB-12101
mESCs
cell line
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Gene expression profile
Padj
less than 0.01
less than 0.05
less than 0.1
less than 0.2
less than 0.5
less than 1
abs(LogFC)
greater than 0.585
greater than 1
greater than 1.5
greater than 2
Top DEG
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Scatter diagram of differential expression
Heatmap of unsupervised hierarchical clustering
Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes