Details for DataSet_8

Sample info of the DataSet

Sample_accession Sample_group Organism Target_gene Data_type sgRNA sgRNA_Number_perVector sgRNA_coordinate PubMed Data_source Cell_type Sample_Type Notes
GSM1631265caseHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line
GSM1631269caseHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line
GSM1631273caseHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line
GSM1631262controlHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line
GSM1631266controlHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line
GSM1631270controlHomo sapiensIL1RNRNA_seqTGTACTCTCTGAGGTGCTC,ACGCAGATAAGAACCAGTT,CATCAAGTCAGCCATCAGC,GAGTCACCCTCCTGGAAAC4chr2:113117749:+,chr2:113117865:+,chr2:113117714:+,chr2:113117781:+25849900GSE66742HEK293Tcell line

Gene expression profile

       

Scatter diagram of differential expression

Heatmap of unsupervised hierarchical clustering

Heatmap image


Function Enrichment Analysis of differentially expressed genes & Gene Set Enrichment Analysis (GSEA) of all expressed genes