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Analysis
Input a sgRNA sequence to evaluate the epigenome editing efficiency
Find datasets with sgRNA similar to yours
sgRNA
Examples :
GACGCAGATAAGAACCAGTT
,
GTATCCTCTATGATGGGAGA
,
CTTGACCAATAGCCTTGACA
,
GAACGACTAGTTAGGCGTGTA
max mismatch
4
3
2
1
0
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Predict efficiency for your sgRNA
EpiCas-DL
link
CRISPRa_seq
CRISPRa_epi
CRISPRoff_seq
CRISPRoff_epi
sgRNA
Examples :
TCCCTCTATGTGCTCGAAGCAGG GCTGCAGGGCCTTTGCTGGGCGG
GGGCCCAGATCCCTCTATGTGCTCGAAGCAGGTGGACCCC GCGCCTCCAGCTGCAGGGCCTTTGCTGGGCGGTTCCTCGC
chromosome
Examples :
chr12 chr19
chr12 chr19
start position
Examples :
100592057 58858532
100592057 58858532
gene symbol
Examples :
ACTR6 A1BG
ACTR6 A1BG
Notes
Selecting the model type of your purpose and its corresding sequence with a right NGG, the CRISPRa model should be 23bp (20bp sgRNA sequences with an NGG PAM) and the CRISPRoff model input sequence should be 40bp (9bp upstream and 8bp downstream sequences together with the 23bp target sequence).
If you want to use the epigenetic model, you need to input the corresponding chromosome position and gene information.
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